00001 /*=========================================================================== 00002 NetEvo Foundation Library 00003 Copyright (C) 2009, 2010 Thomas E. Gorochowski <tgorochowski@me.com> 00004 Bristol Centre for Complexity Sciences, University of Bristol, Bristol, UK 00005 ---------------------------------------------------------------------------- 00006 NetEvo is a computing framework designed to allow researchers to investigate 00007 evolutionary aspects of dynamical complex networks. By providing tools to 00008 easily integrate each of these factors in a coherent way, it is hoped a 00009 greater understanding can be gained of key attributes and features displayed 00010 by complex systems. 00011 00012 NetEvo is open-source software released under the Open Source Initiative 00013 (OSI) approved Non-Profit Open Software License ("Non-Profit OSL") 3.0. 00014 Detailed information about this licence can be found in the COPYING file 00015 included as part of the source distribution. 00016 00017 This library is distributed in the hope that it will be useful, but 00018 WITHOUT ANY WARRANTY; without even the implied warranty of 00019 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 00020 ============================================================================*/ 00021 00022 #ifndef NE_SIM_CVODE 00023 #define NE_SIM_CVODE 00024 00025 00026 #include "ne_common.h" 00027 #include "ne_system.h" 00028 #include "ne_vec_dyn.h" 00029 #include <cvode/cvode.h> /* prototypes for CVODE fcts., consts. */ 00030 #include <nvector/nvector_serial.h> /* serial N_Vector types, fcts., macros */ 00031 #include <cvode/cvode_dense.h> /* prototype for CVDense */ 00032 #include <sundials/sundials_dense.h> /* definitions DlsMat DENSE_ELEM */ 00033 #include <sundials/sundials_types.h> /* definition of type realtype */ 00034 00035 00036 typedef struct { 00037 double absTol; 00038 double relTol; 00039 double step; 00040 ne_bool_t stiff; 00041 } ne_sim_cvode_params_t; 00042 00043 00044 /* Simulates the system using given parameters */ 00045 ne_vec_dyn_t *ne_sim_cvode_run (ne_system_t *system, void *params, double length, double *iy, 00046 FILE *file); 00047 00048 /* Function to build RHS of dy/dt equation */ 00049 int ne_sim_cvode_fn (realtype t, N_Vector y, N_Vector ydot, void *params); 00050 00051 //static void PrintFinalStats(void *cvode_mem); 00052 static int check_flag(void *flagvalue, char *funcname, int opt); 00053 00054 00055 #endif /* NE_SIM_CVODE */
1.7.1