Data Structures |
| struct | ne_sys_t |
| | System data structure. More...
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Defines |
| #define | NE_DYN_PARAMS 10 |
| | Fixed number of node and edge dynamic parameters.
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| #define | NE_NODE_PARAMS 5 |
| | Fixed number of node parameters.
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| #define | NE_EDGE_PARAMS 5 |
| | Fixed number of edge parameters.
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Typedefs |
| typedef ne_real_t | ne_dyn_param_t |
| | Dynamic parameter type.
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| typedef ne_real_t | ne_param_t |
| | Node and edge parameter type.
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Functions |
| ne_sys_t * | ne_sys_alloc (ne_bool_t directed, ne_int_t nodes, ne_int_t nodeStates, ne_int_t edgeStates, ne_bool_t dynNodeVary, ne_bool_t dynEdgeVary, ne_bool_t dynNodeParamsVary, ne_bool_t dynEdgeParamsVary) |
| | Allocate a new ne_system.
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| ne_sys_t * | ne_sys_alloc_from_igraph (igraph_t *G, ne_int_t nodeStates, ne_int_t edgeStates, ne_bool_t dynNodeVary, ne_bool_t dynEdgeVary, ne_bool_t dynNodeParamsVary, ne_bool_t dynEdgeParamsVary) |
| | Allocate a new ne_system from an igraph topology.
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| ne_sys_t * | ne_sys_clone (ne_sys_t *from) |
| | Clone the ne_system.
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| void | ne_sys_free (ne_sys_t *sys) |
| | Free the ne_system.
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| igraph_t * | ne_sys_igraph (ne_sys_t *sys) |
| | Return the igraph topology for the ne_system.
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| ne_bool_t | ne_sys_directed (ne_sys_t *sys) |
| | Return if the topology is directed.
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| ne_int_t | ne_sys_node_states (ne_sys_t *sys) |
| | Return the number of node states (regarding dynamics).
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| ne_int_t | ne_sys_edge_states (ne_sys_t *sys) |
| | Return the number of edge states (regarding dynamics).
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| ne_int_t | ne_sys_nodes (ne_sys_t *sys) |
| | Return the number of nodes.
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| ne_int_t | ne_sys_edges (ne_sys_t *sys) |
| | Return the number of edges.
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| ne_bool_t | ne_sys_dyn_node_vary (ne_sys_t *sys) |
| | Return if the node dynamics can vary.
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| ne_bool_t | ne_sys_dyn_edge_vary (ne_sys_t *sys) |
| | Return if the edge dynamics can vary.
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| ne_bool_t | ne_sys_dyn_node_param_vary (ne_sys_t *sys) |
| | Return if the node parameters can vary.
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| ne_bool_t | ne_sys_dyn_edge_param_vary (ne_sys_t *sys) |
| | Return if the edge parameters can vary.
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| ne_bool_t | ne_sys_edge_exists (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode) |
| | Check is edge exists.
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| ne_err_code_t | ne_sys_add_node (ne_sys_t *sys, ne_dyn_node_t *dyn, ne_dyn_param_t *params) |
| | Add a node with given dynamics and dynamic parameters.
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| ne_err_code_t | ne_sys_add_edge (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode, ne_dyn_edge_t *dyn, ne_dyn_param_t *params) |
| | Add an edge with given dynamics and dynamic parameters.
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| ne_err_code_t | ne_sys_del_node (ne_sys_t *sys, ne_int_t node) |
| | Delete a node.
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| ne_err_code_t | ne_sys_del_edge (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode) |
| | Delete an edge.
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| ne_err_code_t | ne_sys_del_eid (ne_sys_t *sys, ne_int_t eid) |
| | Delete an edge using ID.
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| ne_param_t | ne_sys_node_param (ne_sys_t *sys, ne_int_t node, ne_int_t param) |
| | Return a nodes parameters.
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| ne_param_t | ne_sys_edge_param (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode, ne_int_t param) |
| | Return an edges parameters.
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| ne_param_t | ne_sys_eid_param (ne_sys_t *sys, ne_int_t eid, ne_int_t param) |
| | Return an edge IDs parameters.
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| ne_err_code_t | ne_sys_set_node_param (ne_sys_t *sys, ne_int_t node, ne_int_t param, ne_param_t value) |
| | Set a nodes parameter.
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| ne_err_code_t | ne_sys_set_edge_param (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode, ne_int_t param, ne_param_t value) |
| | Set an edges parameter.
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| ne_err_code_t | ne_sys_set_eid_param (ne_sys_t *sys, ne_int_t eid, ne_int_t param, ne_param_t value) |
| | Set an edge IDs parameter.
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| ne_dyn_node_t * | ne_sys_dyn_node (ne_sys_t *sys, ne_int_t node) |
| | Return the nodes dynamic.
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| ne_dyn_edge_t * | ne_sys_dyn_edge (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode) |
| | Return the edges dynamic.
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| ne_dyn_edge_t * | ne_sys_dyn_eid (ne_sys_t *sys, ne_int_t eid) |
| | Return the edge IDs dynamic.
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| ne_err_code_t | ne_sys_set_dyn_node (ne_sys_t *sys, ne_int_t node, ne_dyn_node_t *nodeDyn) |
| | Set the nodes dynamic.
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| ne_err_code_t | ne_sys_set_dyn_edge (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode, ne_dyn_edge_t *edgeDyn) |
| | Set the edges dynamic.
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| ne_err_code_t | ne_sys_set_dyn_eid (ne_sys_t *sys, ne_int_t eid, ne_dyn_edge_t *edgeDyn) |
| | Set the edge IDs dynamic.
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| ne_dyn_param_t | ne_sys_dyn_node_param (ne_sys_t *sys, ne_int_t node, ne_int_t param) |
| | Return a parameter for a nodes dynamic.
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| ne_dyn_param_t * | ne_sys_dyn_node_params (ne_sys_t *sys, ne_int_t node) |
| | Return all parameters for a nodes dynamic.
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| ne_dyn_param_t | ne_sys_dyn_edge_param (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode, ne_int_t param) |
| | Return a parameter for an edges dynamic.
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| ne_dyn_param_t | ne_sys_dyn_eid_param (ne_sys_t *sys, ne_int_t eid, ne_int_t param) |
| | Return a parametes for an edge IDs dynamic.
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| ne_dyn_param_t * | ne_sys_dyn_edge_params (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode) |
| | Return all parameters for an edges dynamic.
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| ne_dyn_param_t * | ne_sys_dyn_eid_params (ne_sys_t *sys, ne_int_t eid) |
| | Return all parameters for an edge IDs dynamic.
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| ne_err_code_t | ne_sys_set_dyn_node_param (ne_sys_t *sys, ne_int_t node, ne_int_t param, ne_dyn_param_t value) |
| | Set a parameter for a nodes dynamic.
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| ne_err_code_t | ne_sys_set_dyn_edge_param (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode, ne_int_t param, ne_dyn_param_t value) |
| | Set a parameter for an edges dynamic.
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| ne_err_code_t | ne_sys_set_dyn_eid_param (ne_sys_t *sys, ne_int_t eid, ne_int_t param, ne_dyn_param_t value) |
| | Set a parameter for an edge IDs dynamic.
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| ne_err_code_t | ne_sys_set_dyn_node_params (ne_sys_t *sys, ne_int_t node, ne_dyn_param_t *params) |
| | Set all parameters for a nodes dynamic.
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| ne_err_code_t | ne_sys_set_dyn_edge_params (ne_sys_t *sys, ne_int_t startNode, ne_int_t endNode, ne_dyn_param_t *params) |
| | Set all parameters for an edges dynamic.
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| ne_err_code_t | ne_sys_set_dyn_eid_params (ne_sys_t *sys, ne_int_t eid, ne_dyn_param_t *params) |
| | Set all parameters for an edge IDs dynamic.
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| ne_err_code_t | ne_sys_to_GML (ne_sys_t *sys, FILE *file) |
| | Write an ne_system to GML file.
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| ne_sys_t * | ne_sys_from_GML (FILE *file) |
| | Create ne_system from GML file.
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| void | ne_sys_print (ne_sys_t *sys) |
| | Print an ne_system to stdout.
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| gsl_matrix * | ne_sys_adj_to_gsl_matrix_alloc (ne_sys_t *sys) |
| | Create GSL matrix of ne_system adjacency matrix.
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| gsl_matrix * | ne_sys_laplacian_to_gsl_matrix_alloc (ne_sys_t *sys) |
| | Create GSL matrix of ne_system Laplacian matrix.
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Defines the NetEvo system data type and associated functions.
This is used throughout the library to hold all the necessary information (topology and dynamics) of a graph. We use fixed numbers of parameters for the dynamics and general information about nodes and edges. These can be altered by updating the source if memory becomes an issue.
